Here’s a question for everyone who uses a chiller. The inside of the unit where the cooling takes place, is the piping plastic, stainless steel, copper, or something else? Reason I ask is hydro nutes are high in salt content, and if the chiller has any metal parts inside that come in contact with the nute solution it could be causing the metal to break down/rust. The oxidation of any metal could be causing the pH issues, O2 levels in the nute solution would drop as the oxidation would be removing O2 from the solution which could theoretically cause a shift in the pH.
I would imagine that most water chillers do not use any metal components that would come in contact with the nute solution, but cheaper models may have cut corners. That being said, the condenser and anything that contains refrigerant is probably metal, plastic could crack and leak if the coolant gets too cold.
Just thinking out loud here. I don’t use a chiller, so I’m guessing. You may want to put some H2O2 and an enzyme cleaner in your system and let it run for a couple days in between grows. The H2O2 will kill the bad stuff, and the enzyme will help clean out the pipes of gunk build up. With that said, I would definitely replace all piping for the nute system along with the pump. I found that the pump is where a lot of shit builds up, and if you have a mesh filter on it anything that can become a solid will more than likely build up on the filter and create a nice habitat for bacteria.
When I started having issues with cloudy and smelly water I stopped using several different things. I stopped using Hydroguard and Orca, these two were causing a significant amount of the gunk build up. I then stopped using Cannazyme, it was causing the same issue as Hygrozyme with cloudy water. I then started using ZeroTol HC at 0.2 mL per gallon and have had zero issues with cloudy smelly nute solution since.
If I may suggest something, instead of using beneficials such as hydroguard, switch to an H2O2 product such as ZeroTol HC. Not only will this help keep any bacteria in check, but it also delivers more O2 to the plant roots as it is breaking down. I usually add a couple drops after 4-5 days.
Edit: One thing that I do like about H2O2 is it naturally brings the pH down, so all I have to do is add pH up. I did some research and found that most pH down products don’t interact well with nutrients, especially during the bloom phase.